PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G286200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 418aa    MW: 45278.7 Da    PI: 5.2254
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G286200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-1681141155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +    ++ k+ ++++lg ++t+e Aa+a++ a++k++g
  Brast05G286200.1.p  81 SIYRGVTRHRWTGRFEAHLWDkNCFtslQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 141
                         57*******************5444666335446*************************98 PP

2AP254.92.2e-17184236156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAa+a++ a+ +++g+
  Brast05G286200.1.p 184 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAARAYDLAAIQYRGA 236
                         89****99**********988422...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-1781150IPR016177DNA-binding domain
PfamPF008472.5E-1481141IPR001471AP2/ERF domain
PROSITE profilePS5103220.40282149IPR001471AP2/ERF domain
SMARTSM003802.4E-2782155IPR001471AP2/ERF domain
CDDcd000188.63E-1182148No hitNo description
Gene3DG3DSA:3.30.730.101.2E-1682149IPR001471AP2/ERF domain
CDDcd000188.08E-26184245No hitNo description
SuperFamilySSF541711.11E-18184245IPR016177DNA-binding domain
PfamPF008474.1E-13184235IPR001471AP2/ERF domain
SMARTSM003801.0E-27185249IPR001471AP2/ERF domain
PROSITE profilePS5103219.111185243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-20185243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MKRSPPQPSS SPSSSPASSS SSPSSSDSTS SIAIPRKRAR TAATAGGGKA RAAAAKRPKK  60
DGKDSGSSSN GGGSGGGKRS SIYRGVTRHR WTGRFEAHLW DKNCFTSLQN KKKGRQVYLG  120
AYDTEEAAAR AYDLAALKYW GPETTLNFSA DDYGKERSEM EAVSREEYLA ALRRRSSGFS  180
RGVSKYRGVA RHHHNGRWEA RIGRVLGNKY LYLGTFDTQE EAARAYDLAA IQYRGANAVT  240
NFDISRYLDQ PQLLEQLQQG PQVVAALQEE AQHDQQSDNA VQELNSGEAQ PPGGIDEPIA  300
ISDSTEDINT SLTVDDNIEE SLWSPYEFDI MAGVNVSNSM NLSELFSDVA FEGNIGCLFE  360
ECSGIEDCSS RHGAGLAAFG FFTEGDDKLK DVSEMEMEVT PQANDVSCPP KMITVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440PRKRART
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554080.0AK355408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578997.10.0PREDICTED: ethylene-responsive transcription factor WRI1-like
SwissprotQ6X5Y61e-98WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLI1IUU70.0I1IUU7_BRADI; Uncharacterized protein
STRINGBRADI4G43877.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-72AP2 family protein